How audit works for multi farms in 3g?

I want to understand how audit work if I have multiple farms? Is it done sequential from farm 0 to the last farm; or is it done all farms at once?

Also, is there any log when proof fetch is late so farmers like us can quickly know and fix?

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All at once, each with specified number of farming threads in parallel using blocking I/O.

Yes, all cases where farmer generates poof too late will result in warnings on node and/or farmer, so check both.